Thanks for the insight everyone!!! I am going to try and do what Roger suggested and scrap the glue away/restain (I do appreciate having a nuclear option as well!) If not, I will probably going with Rylands and Jaegers advice on repainting.
Do I need to worry about the areas that are already stained getting darker if I try and restain the spotty areas after scrapping off the glue? Should I try to be careful on re staining just the affected areas or does it not matter?
I tested the stain on the building board but that was flatter surface and I did not even realize that glue could be absorbed in to the wood like that. I kind of came into these models with little to no relevant experience so I am certainly learning alot! I REALLY appreciate all your advise and encouragement and I will let you all know how it turns out!